PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_38877_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 445aa    MW: 49543.7 Da    PI: 7.5429
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_38877_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.2e-07192212526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ff + G+C  G++C+F H+
  Neem_38877_f_1 192 VCDFFTK-GWCIKGNSCRFLHV 212
                     7**9999.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.568187214IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014187213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6187211IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5192212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4192215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MESQGHKSHL ESGSSTEDKS KARQPSNALA VGESRVNFKS LGSSNEPFTS QKELSHENQE  60
KSKYSKSRKL LSYAEDNGSQ ESEISKKDIG AFPQVKTHEE RNELHTGGKV HLCNTGIVDS  120
ETSSPSSVTK KNVTGGTWIR DRLDEGTSEE EIKPMGMHPG DDKQRMASRF SSPMIRTRSL  180
SPADGNKRPA VVCDFFTKGW CIKGNSCRFL HVKDDTTNST QLLEEDLAAA TVKTEVQFNE  240
GSRNETERSK MACFPDPLAL SVRNNVSFSS DLSSEREPPL QEVGENKRLP QENHRPSFLQ  300
KENTSSDNSP SSQQLASFRD DMGSILSYKE VGRESLRKNW PADDYGNSAS LKHRASSPIF  360
KNNLLPEYRS SSSGSATLSS NYHSRNPSSY PSSLEEQPWI RSKCMRNDYS SPFSSHSLNS  420
SVVLLMLKSC WTVRENPVIL SCLCF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467754.11e-171PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_006467755.11e-171PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_006467756.11e-171PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A067GDI01e-171A0A067GDI0_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-16C3H family protein